Index

A

add_trajectory() (msm_we.ensembles.Ensemble method)

C

check_tmatrix() (in module msm_we.utils)

clean_tmatrix() (in module msm_we.utils) corr_function() (msm_we.nmm.NonMarkovModel method)

D

directional_mfpt() (msm_we.fpt.MatrixFPT class method)

DiscreteEnsemble (class in msm_we.ensembles) DiscretePathEnsemble (class in msm_we.ensembles)

E

empirical_corr_function() (msm_we.ensembles.Ensemble method) empirical_mfpts() (msm_we.ensembles.Ensemble method) (msm_we.nmm.NonMarkovModel method)

Ensemble (class in msm_we.ensembles)

F

fit() (msm_we.nmm.MarkovPlusColorModel method) (msm_we.nmm.NonMarkovModel method) fpt_distribution() (msm_we.fpt.MatrixFPT class method) from_ensemble() (msm_we.ensembles.DiscreteEnsemble class method) (msm_we.ensembles.DiscretePathEnsemble class method) (msm_we.ensembles.PathEnsemble class method)

from_nm_tmatrix() (msm_we.nmm.NonMarkovModel class method) from_transition_matrix() (msm_we.ensembles.DiscreteEnsemble class method) (msm_we.ensembles.DiscretePathEnsemble class method)

G

get_shape() (in module msm_we.utils)

I

Interval (class in msm_we.utils)

M

map_to_integers() (in module msm_we.utils) markov_commute_time() (msm_we.fpt.MarkovFPT class method) MarkovFPT (class in msm_we.fpt) MarkovPlusColorModel (class in msm_we.nmm) MatrixFPT (class in msm_we.fpt) max_commute_time() (msm_we.fpt.MatrixFPT class method) mean_fpts() (msm_we.fpt.MarkovFPT class method) (msm_we.fpt.MatrixFPT class method) (msm_we.fpt.NonMarkovFPT class method) mfpts_matrix() (msm_we.fpt.MatrixFPT class method) mfpts_to_target_microstate() (msm_we.fpt.MatrixFPT class method) min_commute_time() (msm_we.fpt.MatrixFPT class method)

module msm_we.ensembles, [1] msm_we.fpt, [1] msm_we.nmm, [1] msm_we.utils, [1] msm_we.ensembles module, [1] msm_we.fpt module, [1] msm_we.nmm module, [1] msm_we.utils module, [1]

N

n_states (msm_we.nmm.NonMarkovModel attribute) nm_cmatrix (msm_we.nmm.NonMarkovModel attribute) nm_mfpt() (msm_we.ensembles.DiscretePathEnsemble method) NonMarkovFPT (class in msm_we.fpt)

NonMarkovModel (class in msm_we.nmm) normalize() (in module msm_we.utils) normalize_markov_matrix() (in module msm_we.utils) num_of_nonzero_elements() (in module msm_we.utils)

P

PathEnsemble (class in msm_we.ensembles) pops_from_nm_tmatrix() (in module msm_we.utils)

pops_from_tmatrix() (in module msm_we.utils) populations (msm_we.nmm.NonMarkovModel attribute) pseudo_nm_tmatrix() (in module msm_we.utils)

R

random_markov_matrix() (in module msm_we.utils)

reverse_sort_lists() (in module msm_we.utils)

W

weighted_choice() (in module msm_we.utils)

weighted_fundamental_sequences() (msm_we.ensembles.DiscretePathEnsemble method)